PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G074900.1
Common NameB456_001G074900, LOC105770514
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 276aa    MW: 30823.5 Da    PI: 6.1588
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G074900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.88e-08162209455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  Gorai.001G074900.1 162 SHSLAERVRRGKINERLRCLQDIVPGC----YKTMGMALMLDEIINYVQSLQ 209
                         8*************************8....355889999999999999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-16156226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-8156213No hitNo description
Gene3DG3DSA:4.10.280.103.0E-15158220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.958158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-5162209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-7164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MADFSEQSYR QPFPFLDIDP TMESLTQFAE LNPQSFILDN SAFNFQTFFP LSINDSLFSN  60
QASQGETMSG FIHNSNQSSV SAQPIFSAKT EVEEISNKRK ALDILESSSG NSSSSSPQVS  120
ETGIKRRNNS GRGKRAKSNE KEMEKPKEVV HVRARRGQAT DSHSLAERVR RGKINERLRC  180
LQDIVPGCYK TMGMALMLDE IINYVQSLQN QVEFLSMKLT AASTYYDFNS ESDAMERMQR  240
GKAEEAKELE RLMREGYVGI GGVACFHSSS TYGPL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5933511e-35JX593351.1 Gossypium hirsutum clone NBRI_GE29020 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447202.10.0PREDICTED: transcription factor BEE 1-like isoform X2
SwissprotQ8GWK71e-67BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A0D2LVV00.0A0A0D2LVV0_G
STRINGPOPTR_0012s05210.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29972765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.16e-66BR enhanced expression 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]